Hi KT,
for 2) the usage changed, and you don't need to specify mri (i.e. -segmentation aseg.mgz). For 1), which new steps do you mean specifically?
Bruce On Fri, 19 Oct 2007, Kt Labadie wrote:
I have 2 questions related to version 4.1.
- The ReconAllDevTable on the Martinos Center Freesurfer Wiki is not updated
to reflect the new steps in version 4.1. Does anyone have a breakdown of these new steps? I was not sure of the flags for these new steps, or where they fit in (are they part of 2-pial, 2-cp or 3?) Is the wiki going to be updated to reflect this new version?
- When I load an image in tkmedit (after it has been run all the way through
step 3) I get an error message and it won't load the aseg. The aseg is there, I just have to load it manually. Did the following flag change with the new version?
brainmask.mgz lh.white -aux T1.mgz -aux-surface rh.white -segmentation mri/aseg.mgz $FREESURFER_HOME/FreeSurferColorLUT.txt
Thanks.
KT LaBadie