Re: [Freesurfer] 3dvolreg Error for preproc-sess

Well, if you can't run any AFNI program, then that is the problem. doug

On 6/5/14 11:37 AM, Nitenson, Adam wrote:

Hi Doug,

Unfortunately that did not seem to work. I am normally able to run other AFNI programs on this computer (it's what I've been normally performing my data analyses with).

Best, Adam

On Wed, Jun 4, 2014 at 12:02 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

Do the other programs in AFNI work on that computer? If 3dvolreg
works,
then copy that to 3dvolreg.afni in $FREESURFER_HOME/bin

doug


On 06/03/2014 12:01 PM, Nitenson, Adam wrote:
> Hi all,
>
> I'm running version 5.2 off-site, and I keep running up against an
> error for preproc-sess. From my SUBJECTS_DIR, I am running
>
> preproc-sess -fsd bold -s 608_Sess1 -fwhm 5 -per-run
>
> which provides the following error:
>
> 3dvolreg.afni: symbol lookup error: 3dvolreg.afni: undefined symbol:
> afni_ncerr
> ERROR: 3dvolreg.afni
> Invalid null command.
>
> I found this old communication
>
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg28736.html
> in which this user had the same problem. I found 3dvolreg.afni
in the
> Freesurfer "bin" folder and copied to to my AFNI folder, but I still
> get the same error when running preproc-sess, even with
3dvolreg.afni
> now in the AFNI cluster.
>
> Any idea what the problem might be?
>
> Best,
> Adam Nitenson
>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
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