Hi to all,
there are still correction problems after recon-all!
After recon-all not all of the corrections are visible???????
I corrected e.g. 10 slices. I deleted some voxels in wm.mgz as aux volume, non-white matter classified as white matter. I saved the aux volume and i startet recon-all! After running without errors, i checked in tkmedit. There were 5 of 10 slices corrected, but not the others???? With means there are still 5 slices of the previous corrected including some non-white matter classified as white matter! When i open the cor files for these slice, the corrections are visible!!
please help to find the bug
Best Mareen
-------- Original-Nachricht --------
Datum: Fri, 13 Aug 2010 11:38:01 -0400 (EDT) Von: Bruce Fischl fischl@nmr.mgh.harvard.edu An: Mareen Kussatz mareenkussatz@gmx.de CC: freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] autorecon2
Hi Maureen,
if you exit tkmedit and reload the wm.mgz before rerunning recon-all are your edits in it? It shouldn't matter whether you edit/save in the main or aux volume.
cheers Bruce
On Wed, 11 Aug 2010, Mareen Kussatz wrote:
Hi to all,
after correcting white matter problems, we saved the wm as aux volume
and we tried also to save it as main volume. And than, we started recon-all -autorecon2-wm -subjid (subject file name). The process ends without any error for both conditions but after checking the tkmedit, there weren´t any corrections visible and actually there were no change at all.???
We just want to know if it is a syntax problem or if there is something
wrong with the freesurfer itself.
thanks and best regards.
Mareen Kussatz
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