It's very hard to tell what you are doing without a command-line. Generally, you can pass the full path of a label to surfcluster to make it save it in a particular location. doug
Knut J Bjuland wrote:
I am working on roi analysis. I have made a label using mri_surdcluster and used mri_label2label to copy the label from fsaverage to each individual subject. The next step would be to use mris_anatomical_stats to calculate stats for each subject. I used a Python to merge the txt file from mris_anatomical_stats.
Is it possible to force mri_surfcluster to save the label another dir than fsaverage? Can I use convert roi label to annotation and then use aparc2stats or similar command to get group statics?
Cheers Knut J
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