Hi John
can you email us your label2label cmdline?
cheers Bruce
On Mon, 18 Jul 2011, John Richey wrote:
Dear freesurfer experts,
I have a series of labels corresponding to clusters of significant activation in fsaverage space.
I want to map these back to native space using mri_label2label, however when I view the individual (native) labels, the registration is way off and the labels do not map into plausible space.
I have tried using talairach space as an intemediary (by omitting the --reg flag in mri_label2label), as well as using fsl tools (FLIRT) to create a registration matrix but unfortunately I cannot seem to get the label into the right space to query my ces maps in funcroi-sess.
Have others encountered this problem? And how might I create a more robust registration between fsaverage and native space to facilitate the spatial transformation of my labels?
Thanks very much in advance, John _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer