External Email - Use Caution
Hello Behçet, Are you saying the version of the Ubuntu operating system changed and now when you run the same command you get this error about the missing library ?
If so, I would check with your system administrators to see if they have installed the freesurfer 7.1.1 .deb freesurfer package from https://secure-web.cisco.com/1kZqy9BcKMr7diHAAdkyYDg2sSQj5AQELQZUIDe_I964hoH... which matches the version of Ubuntu you are now running. Running the installer package should try to fix that missing library dependency. - R.
On Feb 15, 2023, at 05:36, behçet ayyıldız <behcetayyildizz@gmail.com> wrote: External Email - Use Caution Dear All, I was using Linux Ubuntu to perform my analysis. However, they were changed with Linux ..... a couple of days ago. And while the segmentThalamicNuclei.sh command was running before the change, after the change it didn't run and I got the following message.drodriguez@causal:/data_august/Daniela/Behcet/Freesurfer_pulvinar_OCD$ segmentThalamicNuclei.sh con_HaJa93Setting ITK threads to 1#--------------------------------------------#@# Thalamic Nuclei processing Wed 15 Feb 2023 11:09:10 AM CET------------------------------------------Setting up environment variables---LD_LIBRARY_PATH is .:/sw/freesurfer/7.1.1//MCRv84//runtime/glnxa64:/sw/freesurfer/7.1.1//MCRv84//bin/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/os/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/server:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/client:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64:/sw/freesurfer/7.1.1//bin/SegmentThalamicNuclei: error while loading shared libraries: libncurses.so.5: cannot open shared object file: No such file or directory127Linux causal.brain.mri.tu-muenchen.de 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/LinuxDo you guys have any idea how to fix it ?Thanks in advance.-- Behçet Ayyıldız.._______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer