it's because analyze doesn't store orientation information, so your images are probably incorrectly oriented. Can you get access to the files in a format before they were converted to dicom?
cheers Bruce On Thu, 6 May 2010 elsh0029@umn.edu wrote:
Hello all, I had two kind of files ( img & hdr). I used fslchfiletype command to create nii.gz files. img and hdr files replaced by nii.gz files. I used mri_convert command to create 001.mgz files and I did. Now, when I'm running recon-all for my data it exits with error:
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Linux joy 2.6.9-89.0.15.ELsmp #1 SMP Sat Oct 10 05:55:45 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux recon-all exited with ERRORS at Wed May 5 13:47:25 CDT 2010
any thoughts? Thank you Ansam
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer