Hi Doug,
I uploaded two example files, as far as I can tell the raw f.nii and talairach transform look okay. I obtained these files from the tutorial data set, so I'm assuming they were processed properly.
Andrew
On Mon, Sep 24, 2012 at 1:03 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
Actually, before you do that, can you check two things
- Does the raw data (eg, f.nii) look ok?
- Does the talairach transform for this subject look ok?
doug
On 09/24/2012 04:02 PM, Douglas N Greve wrote:
Can you upload it to our file drop at
www.nmr.mgh.harvard.edu/facility/filedrop/
On 09/24/2012 02:58 PM, Andrew Bock wrote:
It looks like a very patchy, warped version of the brain. I find that this is true for all subjects (/fsfast-functional/sess???/bold/001/fmcpr.up.sm5.mni305.2mm.nii.gz). I used both freeview and fslview to visualize the images.
On Fri, Sep 21, 2012 at 4:06 PM, Douglas N Greve <greve@nmr.mgh.harvard.edumailto:greve@nmr.mgh.harvard.edu> wrote:
yes, you would expect that. what does it look like? how are you visualizing it? On 09/20/2012 06:18 PM, Andrew Bock wrote: > Hello, > > I am attempting to run preproc-sess on my functional data, andam
> following the tutorial found here: >http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastTutorialV5.1/FsFastPreProc
> > I downloaded the tutorial data, and find that when I view > fmcpr.up.sm5.mni305.2mm.nii.gz it looks quite ugly (i.e. does not look > like a brain). I would expect this file to look like thefsaverage
> brain, is that not correct? > > Andrew > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu<mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358<tel:617-724-2358> Fax: 617-726-7422<tel:617-726-7422> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>
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