no, I don't think that is the case. -noaseg sets UseAseg=0, which stops things like mri_fill from using the aseg, which is not what you want
cheers Bruce On Tue, 26 Sep 2017, Gabor Perlaki wrote:
Dear Bruce,
From the recon-all script it seems to me that autorecon2-noaseg, autorecon2-wm and autorecon2-cp are totally equivalent (the same flags are defined to be true in all three cases). Could you confirm this?
Best regards, Gabor