Re: [Freesurfer] re-running mri_glmfit-sim

You have to re-run doug

Antonella Kis wrote:

dear All,

I would like to know if I am running the

mri_glmfit-sim \ --glmdir Group_Analysis.glmdir \ --sim perm 10000 3 permcsd \ --sim-sign neg \ --cwpvalthresh .05

and I want to change the --sim-sign from neg to positive if I need to run again the whole simulation or I can just run:

mri_glmfit-sim --glmdir Group_Analysis.glmdir \ --no-sim --sim-sign pos or how exactly to edit the mri_glmfit in this case?

Also if I need to add one more subject do I need to re-run the whole simulation or for multiple comparison I can just use the --no-sim option?

Thank you very much! Antonella

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