17 Jun
2020
17 Jun
'20
8:24 a.m.
External Email - Use Caution
Hello,
I ran recon-all on a post-surgery MRI scan. Because of the resection area FreeSurfer did not include certain parts which should be included. What is the correct way of correcting this?
I thought about editing the wm.mgz file by adding missing white matter using a brush value of 255 and erase white matter with a value of 1. Followed by re-creating the surfaces using:
recon-all -autorecon2-wm -autorecon3 -subjid ...
Thank you very much.
Best Regards, Michael
[image: fs.png]
