Hi Freesurfer Community,
I am running TRACULA on a single subject in the dev version (freesurfer-Darwin-OSX-stable-v6-beta-20151015)
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/Applications/freesurfer6beta/bin/trac-preproc
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#@# Image corrections Mon Apr 11 16:15:19 BST 2016
mri_convert /Users/MacPro/Documents/NIMROD_DTI/16084.nii.gz /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig.nii.gz
mri_convert /Users/MacPro/Documents/NIMROD_DTI/16084.nii.gz /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig.nii.gz
$Id: mri_convert.c,v 1.221.2.2 2015/10/02 16:39:36 zkaufman Exp $
reading from /Users/MacPro/Documents/NIMROD_DTI/16084.nii.gz...
TR=11700.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.998406, -0.0447105, -0.0344521)
j_ras = (-0.0435914, 0.998518, -0.0325768)
k_ras = (-0.0358576, 0.0310231, 0.998875)
writing to /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig.nii.gz...
cp 16084.bvec /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig.mghdti.bvecs
cp 16084.bval /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig.mghdti.bvals
mv -f /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/bvecs.tmp /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig.mghdti.bvecs
mv -f /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/bvals.tmp /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig.mghdti.bvals
flip4fsl /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig.nii.gz /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig_flip.nii.gz
INFO: input image orientation is LAS
INFO: input image determinant is -8
fslswapdim /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig.nii.gz x y z /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig_flip.nii.gz
fslorient -forceradiological /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig_flip.nii.gz
mv -f /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig_flip.mghdti.bvecs /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/bvecs
mv: rename /Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/dwi_orig_flip.mghdti.bvecs to */Users/MacPro/Documents/NIMROD_DTI/FS6_16084_MPRAGE_Neuro.nii/dmri/bvecs: No such file or directory*
*trac-preproc exited with ERRORS at Mon Apr 11 16:16:26 BST 2016* ---
What has gone wrong here?
Thanks! Elijah