Can you check to make sure the disk is not filling up? Also, see if subject/mri/tmp.mri_nu_correct.mni.13492/nu1.mnc exists and is of a size similar to orig.mgz
On 12/15/2021 7:27 PM, xuan wrote:
External Email - Use Caution
Oops, forget about the log file. Here it is
------------------ Original ------------------ *From:* "xuan" pearl940311@foxmail.com; *Date:* Wed, Dec 15, 2021 08:28 PM *To:* "freesurfer"freesurfer@nmr.mgh.harvard.edu; *Subject:* nu_correct error
Dear FreeSurfer Experts,
I am attempting to recon-all for my one subject for testing on my lab server. However, I get following error:
ncopen: filename "./tmp.mri_nu_correct.mni.13492/nu1.mnc": Not a netCDF file miopen: MINC package entry point Error opening ./tmp.mri_nu_correct.mni.13492/nu1.mnc mincRead(): error reading volume from file ./tmp.mri_nu_correct.mni.13492/nu1.mnc $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.13492/nu1.mnc...
And here is the relevant information: (1)FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c (2)Platform: Linux node-1-3 4.4.0-62-generic #83-Ubuntu SMP Wed Jan 18 14:10:15 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux (3)log file: please see attached file.
Thanks for the help!
Best, Xuan
Xuan Bu, Ph.D.
State Key Laboratory of Cognitive Neuroscience & Learning Beijing Normal University Email: pearl904311@foxmail.com Webpage: http://helab.bnu.edu.cn/xuanbu/
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