can you send the bbr log file?
On 4/19/2021 2:29 PM, Russo, Andrew William wrote:
Hello FreeSurfer Developers,
I am registering FA maps to T1 for a group of subjects with MS and in many cases the registration is poor for the anterior corpus callosum (attached), cerebellum, pons, and temporal lobe. I am using the following commands (FreeSurfer version 6.0):
bbregister \ --dti \ --reg diff2T1_reg.dat \ --mov eddy_corrected_b0.nii.gz \ --s subject_temp
mri_vol2vol \ --mov dtifit_FA.nii.gz \ --targ orig.mgz \ --o FA2T1.nii.gz \ --reg diff2T1_reg.dat
Do you have any suggestions for improving this registration?
Thank you, Andrew
Andrew Russo Clinical Research Coordinator Multiple Sclerosis Imaging Lab Massachusetts General Hospital 149 13th Street | Boston, MA 02129 617-726-7531
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