The FDR is done through the tksurfer interface. Select the desired FDR, hit the button, and it sets the vertex-wise threshold needed to realize that FDR.
For the permutation, it is done similar to the other simulations. See the tutorial.
doug
jorge luis wrote:
Hello freesurfer experts
I would like to know how to get in freesurfer corrected p-values and t-statistics for the FDR analysis and corrected t-statistics for the clusters in the cluster size inference by permutation testing.
In advance thank you very much
Jorge Luis
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer