Re: [Freesurfer] Dimension Mismatch Error

Michelle, before you do that, can you run the offending program with -debug and send me the (copious) terminal output? Your anat should not have to be re-run.

doug

Michelle Umali wrote:

Hi Bruce, Will this undo my wm and pial edits?

Thanks. Michelle

On Sat, Oct 1, 2011 at 3:37 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu> wrote:

try running


recon-all  -s subject -make all

and leave the -dontrun off. It should bring everything up to date

Bruce



On Sat, 1 Oct 2011, Michelle Umali wrote:

    Dear Freesurfers,
    I'm still getting a MRISripZeros() and MRIScopyMRI Surf/src
    mismatch error
    when running fieldsign-sess.  You suggested that this problem
    was due to the
    surfaces being out of synch.  When I ran  recon-all -s subject
    -make all
    -dontrun, I saw that several steps had not run.  The data
    looked alright and
    the number of vertices matched when I ran -vno-check.

    The mismatch error is still occurring, and I don't know how to
    proceed.

    Please suggest steps that I should take.

    Thanks.
    Michelle





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