can you run ls -l and mri_info on it? On Fri, 15 Mar 2013, Valtina Pouegue wrote:
I get this error------------- esther@m3012-04 ~]$ mri_info $SUBJECTS_DIR/AA/t1_icbm_normal_1mm_pn3_rf20.mnc mincRead(): can't find file/home/esther/Freesufer/freesurfer/subjects/AA/t1_icbm_normal_1mm_pn3_rf20.m nc -------I check in the directory enad the file is right there,
Date: Fri, 15 Mar 2013 09:24:22 -0400 From: fischl@nmr.mgh.harvard.edu To: pvaltti@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_convert problem
Hi Valtina
you can convert directly without going through nii. What happens when you run ls -l on that file? Or mri_info?
cheers Bruce
On Fri, 15 Mar 2013, Valtina Pouegue wrote:
Hi,
I have a problem of conversion. I would like to convert mnc file to mgz.
But I think I shoul first convert mnc to nii then
nii to mgz. , so I try the command mri_convert and I have this error;
[esther@m3012-04 ~]$ mri_convert $SUBJECTS_DIR/Patient1/fichierMnc.mnc
Folder1.nii.gz
mri_convert
/home/esther/Freesufer/freesurfer/subjects/Patient1/fichierMnc.mnc Folder1.nii.gz
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from
/home/esther/Freesufer/freesurfer/subjects/Patient1/fichierMnc.mnc...
mincRead(): can't find file
/home/esther/Freesufer/freesurfer/subjects/Patient1/fichierMnc.mnc
[esther@m3012-04 ~]$
I look up, and the file is at the rith place.... Could you help me.. Thanks
VP]
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