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Hello everyone,
I am trying to display my lesion map I created in Matlab on a cortical surface, and am getting the following error:
developer@developer-VirtualBox:~$ mri_vol2surf --mov rReslice_Combined_roi_meanRD.nii --mni152reg --trgsubject fsaverage --hemi lhrh --out lh_spm.mgh --projfrac-max 0 1 .1 srcvol = rReslice_Combined_roi_meanRD.nii srcreg = /usr/local/freesurfer/7.2.0/average/mni152.register.dat srcregold = 0 srcwarp unspecified surf = white hemi = lhrh trgsubject = fsaverage surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = nearest float2int = round GetProjMax = 1 INFO: float2int code = 0 Done loading volume INFO: This REGISTER_DAT transform is valid only for volumes between COR types with c_(r,a,s) = 0. Input reg is register.dat -------- original matrix ----------- 0.99753 -0.00732 0.01760 0.95709; -0.01296 -0.00926 0.99706 -17.81596; -0.01460 -1.00094 0.00244 -18.54964; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /usr/home//fsaverage/surf/lhrh.white error: No such file or directory error: MRISread(/usr/home//fsaverage/surf/lhrh.white): could not open file error: No such file or directory error: mri_vol2surf: could not read surface /usr/home//fsaverage/surf/lhrh.white
Could anyone help me fix this? I am very new to this software and need to have this results ready for my supervisor if possible!
Thank you, Rachel