Dear All,
I have created a volume of interest in itksnap and imported it in FS as a .mgz volume filled binary mask. How can I: 1. export it from FS in matlab and generate a .mat array containing only the volume pixels within the volume (intensity 1) ?
2. Is there a way to generate a 3D surface mesh of the boundary of the volume of interest, as, for example, with the brain pial surface? If not, is there a way to import into FS formats such as VTK, STL or BYU meshes?
Thank you,
Octavian