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Thank you, Bruce, as always. The BA_exvivo.thresh.annot does not annotate all the vertices, see attached BA.png. Is there a complete Brodmann map like in the atlas image? Thank you, Octavian
On Fri, Jan 8, 2021 at 10:37 AM Fischl, Bruce BFISCHL@mgh.harvard.edu wrote:
Hi Octavian
- Yes, there is a write_annotation.m that you can use.
- We output an annot of the max probability labels at each point I
think called BA_exvivo.thresh.annot
Cheers
Bruce
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *Octavian Lie *Sent:* Friday, January 8, 2021 11:26 AM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] write .annot files
External Email - Use Caution *Dear All,
These are probably rookie questions.
- I can read an .annot file with read_annotation.m, is there a way to
write one? (for example read it to matlab, modify, and save, or create a combined (lh+rh) aparc.annot file etc.
- On the same line, how one combines all the Brodmann labels into a
Brodmann parcellation, if not done already..
Thank you,
Octavian
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