Dear Bruce
If I use analyze would it effect the results?
Dicoms are preferable because?
I have processed about 30 subjects using analyze. I have noticed some cases where surfaces were not done correctly in few regions other than that no major problems.
If it makes big difference to use dicom. Should I use par images to transform them into dicom on scanner or is there any other way to do it?.
Thanks Ayaz
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Thursday, August 11, 2011 2:10 PM To: Ayaz, Muhammad Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] recon-all and corrected hemispheres
Hi Ayaz
you are *much* better off avoiding analyze as a format entirely. Can't you give the dicoms right off the scanner to recon-all?
cheers Bruce On Thu, 11 Aug 2011, Ayaz, Muhammad wrote:
Dear All,
I acquired the images using Phillips scanner. I converted the images from par into analyze using MRIcro. I noticed that images were flipped when I view them in the axial plane, i.e. when I look at the images on the computer screen the Right hemisphere (where we tapped the fish oil tablet) is on the right side of the image.
Should I flip the images before running through the recon-all?
Thanks
Ayaz
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