External Email - Use Caution
Dear freesurfer,
I am attempting to extract LGI statistical data from a label running the mri_segstats command
Here is the script I am attempting to run:
mri_segstats --slabel A152 rh rh.c1.label --i $SUBJECTS_DIR/A152/surf/rh.pial_lgi --sum rh.aparc.pial_lgi.stats
This returns an error: error: mri_segstats: could not open label file rh.c1.label
I created the label using freeview - make closed path - then filling the closed path. The label projects on pial and inflated surfaces Furthermore the label is able to be identified and used in the following command
mris_anatomical_stats \ -l /Users/lu8342ha/Desktop/subjects/A152/label/rh.c1.label \ -f /Users/lu8342ha/Desktop/subjects/A152/stats/rh.c1.stats \ A152 \ rh
Please could you advise me on where I am going wrong here?
Many thanks,
Luke