Hi Lucia,
we've never tried, but certainly give it a shot. You would want to apply an MT subtraction that enhances gray/white contrast though.
cheers, Bruce On Mon, 2 Mar 2009, Lucia Garrido wrote:
Dear Freesurfers,
I was wondering whether it would be possible to run recon-all with MT images? My final aim is to compare cortical thickness between two groups. I've done this with T1 weighted images, but was wondering whether i could also do with MT images. Segmentation in SPM worked really well on these images.
Thank you very much.
Best wishes,
Lucia
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