I'm not sure what you are trying to do. The HO atlas is volume-based, isn't it?
On 1/3/2025 4:41 PM, Zeng, Xinglin wrote:
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Dear Community, I am currently working on visualizing ROI boundaries on the brain surface using the Harvard-Oxford brain atlas. My goal is to generate a surface plot that overlays ROI boundaries from the atlas in a clear and accurate manner. I also tried visualizing in Freeview, connectome_workbench, and I could plot the surface but I was unable to plot the boundaries correctly. Specific challenges I’m facing: I don’t know how to combine the ROI boundaries with a functional surface overlay while keeping the boundaries visible. image https://secure-web.cisco.com/1fPE3CB8QmpDeyTgP4PtZ-z8NpAcvN9BTPzZ9KyYFvuwJFdGkBgzzlDbAeHjSiWowHCcdjFYy_0RVY14gTa8kqXTTA13YCutucyc0iAhl2VIiptxBZDfj-6nDULTqrOmDy2y1hp-6RgviwTMG2hlNJJ_JrJW__yC-ps45Vs_pVJortE5NFYQDIvl0OecVj561gcZQy7sHy4ramEkNvcrAYRvEe96Hbzr65cCa8ALg4BWI6gWkqpnNcNz3QUDmcVuD0DEEsQVDX1BmpPA7c6Szb5kSk98nYeTWy56xuPubm2RUQD68e-yo9ftyYe5H10EW/https%3A%2F%2Fneurostars.org%2Fuploads%2Fdefault%2Foriginal%2F2X%2Fc%2Fcbbb2f05337bfed159466379ac2e74a7b160b3a2.jpeg
*image800×330 95 KB https://secure-web.cisco.com/1fPE3CB8QmpDeyTgP4PtZ-z8NpAcvN9BTPzZ9KyYFvuwJFdGkBgzzlDbAeHjSiWowHCcdjFYy_0RVY14gTa8kqXTTA13YCutucyc0iAhl2VIiptxBZDfj-6nDULTqrOmDy2y1hp-6RgviwTMG2hlNJJ_JrJW__yC-ps45Vs_pVJortE5NFYQDIvl0OecVj561gcZQy7sHy4ramEkNvcrAYRvEe96Hbzr65cCa8ALg4BWI6gWkqpnNcNz3QUDmcVuD0DEEsQVDX1BmpPA7c6Szb5kSk98nYeTWy56xuPubm2RUQD68e-yo9ftyYe5H10EW/https%3A%2F%2Fneurostars.org%2Fuploads%2Fdefault%2Foriginal%2F2X%2Fc%2Fcbbb2f05337bfed159466379ac2e74a7b160b3a2.jpeg* I would really appreciate any tips, example commands, or references to similar workflows. Thank you in advance for your help!
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