Hi Mark,
there won't be any defects on the sphere once you've run the topology correction, and in general you never need to look at the spheres (does the workflow tell you to??). If the white and pial surfaces look good you should be all set (although you should look at the auto parcellation to make sure that the registration worked). To go to corresponding points click on save point and goto point in tksurfer/tkmedit.
Bruce
On Sun, 6 Nov 2005, Mark Pinsk wrote:
I just finished going thru the wiki's 'recommended' workflow with one of my subjects, which is just great !
It tells me to use tkmedit to check my wm and pial surfaces after autorecon2. I did and they looked pretty good (nothing caught my eye to have to fix). However when autorecon3 completed, I could easily see a couple little defects on the spheres.
- should i try to fix those defects and re-do autorecon3 ? I imagine so,
especially if I want to cut and flatten my surfaces. 2) how do i link tksurfer and tkmedit so that I may click on the sphere and see the corresponding location on the wm volume? I can't find that explained yet in the wiki.
thx! Mark
ps- using the latest dev version