Hi Feng,
have you looked at the talairach transform (talairach.xfm) to see if it is indeed incorrect? If so, you should correct it manually using tkregister2 (there is a tutorial for this on our wiki)
cheers Bruce On Mon, 2 Aug 2010, Xue, Feng wrote:
Dear Freesurfer experts,
I'm reconstructing 40 subjects' sMRI data. I succeeded in most of them except one subject. I tried many times and on different computers, however, I always met the same error. Could you please give me some suggestions on reconstruting this data?
Many Thanks!
In the attached, please find my entire recon-all.log file, and below is where the error is:
#@# Talairach Failure Detection Mon Aug 2 19:07:35 CST 2010 /expdata/xfgavin/2010/meng_2010/Raw/MPRAGE/freesurfer/sub213/mri
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0165, pval=0.0000 < threshold=0.0050) Linux dlpfc 2.6.26-2-amd64 #1 SMP Sun Jun 20 20:16:30 UTC 2010 x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Aug 2 19:07:35 CST 2010