Oops, I should have asked what version you were using.
The -make flag is not in v3.
Instead you can do: recon-all -hemi rh -autorecon3 -nosphere -s <subjid>
This will run just the right hemisphere through the rest of -autorecon3. Doing -nosphere will skip the step before -surfreg which was already completed. Allison
On Fri, 25 Jan 2008, Chris Watson wrote:
Hi Allison, this is the error message I received:
[freesurfer@thalamus subjects]$ recon-all -make all -s <subjid> ERROR: Flag -make unrecognized. -make all -s <subjid>
I'm running v3.0.4.
Allison Stevens wrote:
You can do: "recon-all -make all -s <subjid> and it will run all the remaining steps that have not been done or are out of date.
On Fri, 25 Jan 2008, Chris Watson wrote:
Hello, While running recon-all on a subject, my machine logged me off for an unrelated reason. It was stopped during -autorecon3, specifically at -surfreg (mris_register) for the right hemi. The left hemi was already done, I believe. What would be the command to start from that step, and continue to the end?
Thanks, Chris _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer