External Email - Use Caution
Hi Bruce I am working on segmentation of brain regions. I wanted to know: 1. If it is possible that I could get brain segmented into 8 regions or maybe 20, because when I segmented using recon-all command, I got segmentation of 45 regions ? 2. I was looking at the capability of generating my own atlas using tkmedit, but I was stuck at that as well. 3. Plus I don't understand which is the label image. I use the command tkmedit subject_name image -aseg command to view the segmentations. The aseg.mgz alone volume does not show all the segmented regions. If I want a single volume that has the labels, how would I get that. I eventually want a .nii label volume and .nii original volume
Thank You
On Thu, Dec 13, 2018 at 8:13 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Fariha
can give us more details? How would you like to customize them? I think the answer is probably no, but I'm not sure I understand what you are trying to do cheers Bruce
On Wed, 12 Dec 2018, Fariha Muazzam wrote:
External Email - Use CautionHi
I am working in Freesurfer for subcortical segmentation of brain, I did
segmentation of a volume and
I got around 45 regions. Is it possible that I could customize the
regions I want or number of
segments that I want?
Thank You Regards
Fariha Muazzam Research Officer
Al-Khawarizmi Institute of Computer Science (KICS)
University of Engineering and Technology (UET), Lahore
Email: fariha.muazzam@kics.edu.pk | Web: www.kics.edu.pk
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer