Hi all,
recon-all -stage1 gives me an error on "could not find corpus callosum". So, I used Tkmedit to find xyz talairach coordinates of the two structures and ran stage1 again, many times with different coordinates. "surfaces" are twisted and "filled" volume didn't look like a brain.
How can I find correct coordinates? The way I did: I loaded T1 volume and aux volume and picked the approximate center of each structure.
Any wise words? Thanks.
Nam.