It still does not find the file.
[shimshon:TrioTim-35101-20120912-135155-195000] (nmr-stable5.0-env) recon-all -i ./cluster/archive/301/siemens/TrioTim-35101-20120912-135155-195000/MR.1.3.12.2.1107.5.2.32.35101.3.2012091214284986179598358 -i ./cluster/archive/301/siemens/TrioTim-35101-20120912-135155-195000/MR.1.3.12.2.1107.5.2.32.35101.3.2012091214340478463998836 -s 39_bay6 ERROR: cannot find ./cluster/archive/301/siemens/TrioTim-35101-20120912-135155-195000/MR.1.3.12.2.1107.5.2.32.35101.3.2012091214284986179598358 Linux shimshon 2.6.18-308.13.1.el5 #1 SMP Tue Aug 21 17:10:18 EDT 2012 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s exited with ERRORS at Fri Sep 14 13:32:22 EDT 2012
/cluster/archive/301/siemens/TrioTim-35101-20120912-135155-195000/MR.1.3.12.2.1107.5.2.32.35101.3.2012091214284986179598358
On 09/14/2012 01:01 PM, Eiran Vadim Harel wrote:
Hi,
3 T1_MPRAGE_sag_short 3.39 2430 7 unknown ROW 190 /cluster/archive/301/siemens/TrioTim-35101-20120912-135155-195000/MR.1.3.12.2.1107.5.2.32.35101.3.2012091214284986179598358
This is what it gives me when i do dcmunpack. What shall i use as the file indicator in the recon-all -i ./.... Thanks! eiran
You'll need to run dcmunpack without the -martinos flag. This will (eventually) give you a list of runs and corresponding file names. Find the one that is the MPRAGE you want to recon, and pass that as -i to recon-all. Unfortunately the name change makes it harder/slower to unpack data here. doug
On 09/14/2012 11:06 AM, Eiran Vadim Harel wrote:
Hi all, Is there a change in the unpacking of the MPRAGE and DICOM files? The names of the files have changed. what file name should be put in the command: recon-all -i./file name -s subjectname Thanks, Eiran _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html