hi
i installed a newer version of freesurfer (using download freesurfer-Linux-rh9-v2.2.tar.gz) but when i try and run tkmedit or tksurfer i get the error:
"error while loading shared libraries: libitk3.2.so: cannot open shared object file: No such file or directory"
this is my output when i source SetUpFreeSurfer.csh:
Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /home/jaspell/freesurfer FSFAST_HOME /home/jaspell/freesurfer/fsfast SUBJECTS_DIR /home/jaspell/freesurfer/subjects FUNCTIONALS_DIR /home/jaspell/freesurfer/sessions MINC_BIN_DIR /usr/pubsw/packages/mni/current/bin MINC_LIB_DIR /usr/pubsw/packages/mni/current/lib TCLLIBPATH /home/jaspell/freesurfer/lib/tcltktixblt/lib FSL_DIR /usr/local/fsl
and these are the contents of /home/jaspell/freesurfer/lib/tcltktixblt/lib:
blt2.4/ libBLTlite24.a libtclstub8.4.a libtk8.4.so* tix8.1/ libBLT24.a* libBLTlite.2.4.dylib* libtix8.1.8.3.so libtk.so.0* tixConfig.sh libBLT.2.4.dylib* libBLTlite.a libtix8.1.8.4.so libtkstub8.4.a tk8.4/ libBLT.2.dylib* libtcl8.4.so* libtixsam8.1.8.4.so tcl8.4/ tkConfig.sh libBLT.a* libtcl.so.0* libtix.so.0 tclConfig.sh
any idea how to fix it?
i don't suppose there's a way of updating an old version of freesurfer without reinstalling the entire (new version) package?
thanks!
jane
In message Pine.LNX.4.62.0512021326490.5676@icebox.nmr.mgh.harvard.edu Doug Greve greve@nmr.mgh.harvard.edu writes:
That's a pretty old version. Can you download and install a new version?
I actually don't know that much about the interpretation of the color wheel. Maybe Nouchine or Sari can help with this.
doug
On Fri, 2 Dec 2005, Jane Aspell wrote:
hi again
i'm still really stuck with my retinotopy analysis as i'm not sure if my version of paint-sess $Id: paint-sess,v 1.2 2003/08/06 00:53:50 greve Exp $ FAST Version 20031218) has a bug in it (it doesn't make the field sign map). i originally downloaded freesurfer-20040218-Linux.tar.gz (for RedHat 9).
also, can someone also confrim the colour coding is: red=upper field/fovea, blue=horizontal meridian/parafovea, green=lower visual field/periphery?
i can't work out what the overlay threshold settings should be in tksurfer to correctly display the colours to code the retinotopy, is there some rationale for choosing them?
thanks a lot for your help!
Jane
In message Pine.LNX.4.62.0511280225500.19611@icebox.nmr.mgh.harvard.edu Doug Greve greve@nmr.mgh.harvard.edu writes:
What version of freesurfer (and paint-sess) are you using? This was a problem in some versions about 6 mo ago, but I thought I fixed them all.
doug
On Thu, 24 Nov 2005, Jane Aspell wrote:
hi again I have been proceeding with the retinotopy analysis using FsFast,
following the
instructions at:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsFastIndividualRetinotopyAnalysis
and i believe i have successfully overlaid the results on my surfaces and
now
have two questions:
i wasn't able to create the fieldsign with 'paint-sess' because it
couldn't find
tksurfer.new. when i run 'surf-sess' i use the flag -old which forces it
to use
tksurfer.old but this doesn't work in the former case. how can i make 'paint-sess' use tksurfer.old and thus create the fieldsign?
there are no instructions on how to relate the colours seen when viewing
eccen
and polar to the location of the ring and wedge. is there a map somewhere
that
can be loaded that tells me what order the colours run from fovea to
periphery
and from vertical to horizontal meridian etc.?
thanks again for your help!
jane
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422