Dear FS experts,
I tried to run the QA Tools on a subject with the following command: *${QA_TOOLS}/recon_checker -s 207043_M0_2010-10-07 -outputFOF ${SUBJECTS_DIR}/FOF -gen-outputFOF -gen-asegLUT ${SUBJECTS_DIR}/AsegOutliers*
But I got all errors concerning the detection of Aseg outliers: *Making aseg look-up table, /NAS/tupac/matthieu/FS5.3//AsegOutliers* *parsing arguments ...* *checking parameters ...* *MeanFile is /NAS/tupac/matthieu/FS5.3//AsegOutliers* *checking logs ...* *done checking logs ...* *done checking parameters ...* *moving previous log files to *.bak* *done moving previous log files* *Processing each subcortical label ...* *(standard_in) 1: syntax error* *gawk: /home/matthieu/programs/QAtools_v1.1/gstd.awk:22: (FILENAME=- FNR=1) fatal: division by zero attempted* *(standard_in) 1: syntax error* *(standard_in) 1: syntax error* *(standard_in) 1: syntax error* *(standard_in) 1: syntax error* *(standard_in) 1: syntax error* *(standard_in) 1: syntax error*
*-----Checking asegs for outliers...Using asegLUT: /NAS/tupac/matthieu/FS5.3//AsegOutliersparsing arguments ...checking parameters ...checking logs ...done checking logs ...done checking parameters ...moving previous log files to *.bakdone moving previous log filesProcessing each subcortical label ...(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error(standard_in) 1: syntax error* Please find attached the recon_checker summary.
Thanks in advance for any help !
Best regards, Matthieu