Re: [Freesurfer] questions regarding freesurfer 4.0.5

18 Jun 2008

      Sebastian,
responses:
point 1) yes, sorry, no freeview yet for the mac.  still trying to get
the wxWidgets library (a relatively new one for us) to work on the mac
with the freeview code.  freeview is still very new though.
point 2) we just recently got a 64bit mac (the old was was a mac mini,
which are 32b), so we do intend to get a 64b leopard-i686 release out.
point 3) looking into this (scuba crash).  i think scuba2 works though.
Thanks for the feedback
Nick
On Wed, 2008-06-18 at 10:57 +0200, Sebastian Moeller wrote:
...
First, if this shows up twice, let m apologise for mixing up my email  
addresses...
Aloha fellow surfers,
I just installed ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer-Darwin-leopard-i686-stable-pub-v4.0.5-full.dmg 
  on my:
intel macbook, running 10.5.3 with 4GB of RAM. A few observations:

minor: freeview does not seem to be part of the dmg, probably

expected, but from the release notes it is not obvious, whether the  
macos version should contain it or not
2) minor, minor: it seems like the whole macos version is built for  
32bit only (at least that is what "file `which mri_convert`" and a few  
other binaries tell me); would it be possible to have a 64bit built  
(than my macbook might suffice for surface reconstruction as well).

scuba dies horribly (tkmedit and tksurfer, however seem to work, at

least they start up and display something), here is the problem report:
Path:            /opt/freesurfer//bin/scuba.bin
Identifier:      scuba.bin
Version:         ??? (???)
Code Type:       X86 (Native)
Parent Process:  tcsh [18243]
Date/Time:       2008-06-18 10:10:42.832 +0200
OS Version:      Mac OS X 10.5.3 (9D34)
Report Version:  6
Exception Type:  EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000
Crashed Thread:  0
Thread 0 Crashed:
0   scuba.bin                     	0x001e5764 0x1000 + 1984356
1   dyld                          	0x8fe0e723  
ImageLoader::recursiveInitialization(ImageLoader::LinkContext const&,  
unsigned int) + 307
2   dyld                          	0x8fe0e809  
ImageLoader::runInitializers(ImageLoader::LinkContext const&) + 57
3   dyld                          	0x8fe04102  
dyld::initializeMainExecutable() + 146
4   dyld                          	0x8fe07b5f dyld::_main(mach_header  
const*, unsigned long, int, char const**, char const**, char const**)

2975

5   dyld                          	0x8fe01872  
dyldbootstrap::start(mach_header const*, int, char const**, long) + 818
6   dyld                          	0x8fe01037 _dyld_start + 39
Thread 0 crashed with X86 Thread State (32-bit):
  eax: 0x00000000  ebx: 0x001e570c  ecx: 0x00000002  edx: 0x00000000
  edi: 0x00000026  esi: 0x00001000  ebp: 0xbfffd548  esp: 0xbfffd4c0
   ss: 0x0000001f  efl: 0x00010282  eip: 0x001e5764   cs: 0x00000017
   ds: 0x0000001f   es: 0x0000001f   fs: 0x00000000   gs: 0x00000037
  cr2: 0x00000000
Binary Images:
    0x1000 -   0x23ffed +scuba.bin ??? (???)  
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1.dylib
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0x9715e000 - 0x97179ff3  libPng.dylib ??? (???)  
<c0484bec6e2432b406755591924fe664> /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ 
Versions/A/Resources/libPng.dylib
0x9717a000 - 0x971c0fef  com.apple.Metadata 10.5.2 (398.18)  
<adbb3a14e8f7da444e16d2fd61862771> /System/Library/Frameworks/ 
CoreServices.framework/Versions/A/Frameworks/Metadata.framework/ 
Versions/A/Metadata
0x971f6000 - 0x971fbfff  com.apple.CommonPanels 1.2.4 (85)  
<3b64ef0de184d09c6f99a1a7e77e42be> /System/Library/Frameworks/ 
Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/ 
A/CommonPanels
0x971fc000 - 0x97233fff  com.apple.SystemConfiguration 1.9.2 (1.9.2)  
<8b26ebf26a009a098484f1ed01ec499c> /System/Library/Frameworks/ 
SystemConfiguration.framework/Versions/A/SystemConfiguration
0xfffe8000 - 0xfffebfff  libobjc.A.dylib ??? (???) /usr/lib/ 
libobjc.A.dylib
0xffff0000 - 0xffff1780  libSystem.B.dylib ??? (???) /usr/lib/ 
libSystem.B.dylib

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Re: [Freesurfer] questions regarding freesurfer 4.0.5