Re: [Freesurfer] aparc+aseg is all left cerebral white matter

Hi Elias,

have you looked at the surfaces? Are they correct?

Bruce On Mon, 24 May 2010, Elias Kersten wrote:

Hi,

I am trying to run a subject through the entire recon-all pipeline. However, I noticed the second to last step, "-wmparc", was taking a very long time (days).

Looking over the data, the aparc+aseg.mgz file is almost all labeled as "Left-Cerebral-White-Matter", including the background. Also, the lh.ribbon.mgz file appears like a series of speckles, while the rh.ribbon.mgz file looks normal.

I'm not sure where this problem is originating from or what my next steps should be. Any suggestions?

Thanks, Elias

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