Re: [Freesurfer] how to separate any sub cortical region in freesurfer ?

yes, you can do that with either of the binaries I mentioned

cheers Bruce On Tue, 3 Oct 2017, Vidhu Agrawal wrote:

Respected Sir,

I meant to ask that if i want to separate for example hippocampus and view as a separate volume what code should i implement?

On Mon, Oct 2, 2017 at 6:44 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: what do you mean by separate? Extract into a separate volume? If so, you can use mri_extract_labels or mri_binarize with the --match flag.

  cheers
  Bruce
  On Mon, 2
  Oct 2017, Vidhu Agrawal wrote:

  > how to separate any sub cortical region in freesurfer ?
  >
  >
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