Hi Bruce
I converted the dicom into 001.mgz. Then I tried to reslice.
mri_convert -rl -i orig/001.mgz -o orig/001.mgz mri_convert -rl -i orig/001.mgz -o orig/001.mgz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from orig/001.mgz... TR=2730.00, TE=3.45, TI=1000.00, flip angle=7.00 i_ras = (-0, -1, 0) j_ras = (-0, -0, -1) k_ras = (-1, 0, 0) reading template info from volume -i...
mri_read(): couldn't determine type of file /home/knutjb/freesurfer/expo/test/mri/-i error reading from volume -i
Could you please give me an example on how to use mri_convert to reslice please?
Knut J
On 10/15/2012 12:43 AM, Bruce Fischl wrote:
Hi Knut
you could mri_convert them into mri/orig/001.mgz and 002.mgz, reslicing the 125 into the 128 geometry (-rl) and go from there.
cheers Bruce
On Sun, 14 Oct 2012, Knut J Bjuland wrote:
Hi,
When I import one subject with recon -i dicom -i dicom -s subjec, I get this error message ERROR: inputs have mismatched dimensions! I think it is caused by the fact that there is a different number of slices into the two series. One series has 256x256x125 white the other has 256x256x128. How can I detect if there is missing slices in the series with 125 slices? What would you recommend me to do? Is is possible to ask recon-all to bypass this error message and import both series?
Knut J
output
k_ras = (-1, 0, 0) writing to /home/knutjb/freesurfer/subject_dir/subject/mri/orig/001.mgz... ERROR: inputs have mismatched dimensions! /home/knutjb/freesurfer/subject_dir/dicom/subject_dicom/t1_mpr_sag_3D/MR.9677.100
is 256 x 256 x 125 while /home/knutjb/freesurfer/subject_dir/dicom/subject_dicom/t1_mpr_sag_3D2/MR.9677.235
is 256 x 256 x 128 Linux dmed4960 3.2.0-32-generic #51-Ubuntu SMP Wed Sep 26 21:33:09 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux
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