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I'm attempting to do a full brain segmentation for a subject in my study using recon-all but after hours of running it did not reach the final step of creating aparc+aseg (the file I need), even though no error was printed. The last file that was created was 14 hours ago (till I stopped the run manually just now).
my command is: recon-all -s ./00_FSseg -i ./8_t1_mp2rage_sag_p3_iso_UNI_Images/004933_t1_mp2rage_sag_p3_iso_UNI_Images_1.dcm -openmp 8 -all
Attached is the log report of the run.
By the way, this is a subject I have tried 3 times already to segment with no success, although most subjects in my study succeeded on the first try.
recon-all -version command outputs this:
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
Thank you,
Rona Haker