I thought the default was p10, so I just used that to try again, however I'm still getting that error with no extra info in the log. what is the name of the queue, maybe that is my problem:
command:
pbsubmit -q p10 -l nodes=1:opteron -m chinsel -c 'recon-all -s RMAUT021 -all -i /cluster/archive/292/siemens/TrioTim-35006-20110508-105030-353000/353000-000004-000001.dcm -mail chinsel@nmr.mgh.harvard.edu -force'
output:
Opening pbsjob_4 qsub -V -S /bin/sh -m abe -M chinsel -q p10 -l nodes=1:opteron -r n /pbs/chinsel/pbsjob_4 qsub: Job exceeds queue resource limits MSG=cannot locate feasible nodes FATAL: qsub call failed. Check above for error messages. [1] + Done gedit pbsjob_3
What exact website page are you using for help on launchpad? launchpad
has no
opteron nodes so you should not be specifying that resource. Its queue
names
are also different than seychelles. There is no sergeant queue. Read: https://www.nmr.mgh.harvard.edu/martinos/itgroup/launchpad.html On Tue, 21 Jun 2011, Chindhuri Selvadurai wrote:
Hello, I am trying to do recon-all using launchpad, and I am not sure how to
fix
the error I am getting. I checked IT's launchpad help website, but
can't seem to figure it out.
Using fs v4 subjects_dir: /space/ventzl/36/users/RespMon12C/subjects command: pbsubmit -q sergeant -l nodes=1:opteron -m chinsel -c 'recon-all -s RMAUT021 -all -i /cluster/archive/292/siemens/TrioTim-35006-20110508-105030-353000/353000-000004-000001.dcm
-mail chinsel@nmr.mgh.harvard.edu -force'
This is the output I'm getting: Opening pbsjob_3 qsub -V -S /bin/sh -m abe -M chinsel -q sergeant -l nodes=1:opteron
-r n
/pbs/chinsel/pbsjob_3 qsub: Unknown queue MSG=cannot locate queue FATAL: qsub call failed. Check above for error messages. I'm also not getting any e-mails. Is there a way to check an error log
like on seychelles?
Best, Chindhuri Selvadurai Psychiatric Neuroimaging, Manoach Lab Martinos Center for Biomedical Imaging, MGH Phone: (617)726-0307 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Paul Raines email: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street Charlestown, MA 02129 USA
Best,
Chindhuri Selvadurai
Psychiatric Neuroimaging, Manoach Lab Martinos Center for Biomedical Imaging, MGH Phone: (617)726-0307
Best,
Chindhuri Selvadurai
Psychiatric Neuroimaging, Manoach Lab Martinos Center for Biomedical Imaging, MGH Phone: (617)726-0307