8 Jan
2019
8 Jan
'19
3:09 a.m.
External Email - Use Caution
Hello FSL and Freesurfer Experts,
We are trying to find the paths between 5 fMRI ROIs (seeds). We are using the --network option. How do we go about thresholding the fdt_path.nii.gz?
Thanks so much,
Joe
probtrackx2 --network -x ${dtidir}/seeds.txt -l --onewaycondition -c 0.2 -S 2000 --steplength=0.5 -P 5000 \ --fibthresh=0.01 --distthresh=0.0 --sampvox=0.0 --avoid=${dtidir}/not_WM.nii.gz \ --forcedir --opd -s ${dtidir}.bedpostX/merged -m ${dtidir}.bedpostX/nodif_brain_mask.nii.gz \ --dir=${dtidir}/FRONTAL_PARIETAL_TRAX