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Can you load the wmparc along with the surface in freeview? Also send the recon-all.log file. Is it possible that you ran recon-all several times on this subject? Eg, the surfaces might not have been good in that chunk, so you fixed them and reran, but maybe you did not rerun it all the way and the wmparc does not reflect the update.
On 7/17/2023 11:09 AM, Fahad Hannan wrote:
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Hello,
Looking at the wmparc.mgz file, there is a chunk in the top right frontal region that does not show up as part of the segmentation. I figured I needed to add control points through Freeview in case the chunk was not included as part of the brain. However, in Freeview it shows it included in the segmentation. Images attached show the brain in 3Dslider where the chunk is not segmented, and Freeview showing rl/lh.white and rl/lh.pial overlayed.
Regards, Fahad
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