Re: [Freesurfer] intensity normalization

see if the ?h.white surface is accurate. If it is, then you're all set. If it's not then you can add a few control points in the dark wm in those regions.

cheers, Bruce On Fri, 10 Feb 2006 dominick@bu.edu wrote:

Hi, I had been having a lot of trouble with the skull stripping in the newest dev version (it was taking off the top half of the head and leaving head and skull on the bottom half). I was able to fix this by redoing the intensity normalization step from autorecon1 using control points. My question is - In the brains where I did not have a problem with skull stripping, but after autorecon1 I have white matter intensity values below 110, should I redo intensity normalization with control points on them as well? Thanks! Kelli