Hi Don,
yes, this is a bug. Working on it ...
doug
Don Hagler wrote:
Here is the version info for recon-all:
$Id: recon-all-nmr,v 1.107 2005/09/12 17:36:59 greve Exp $
From: Doug Greve greve@nmr.mgh.harvard.edu To: Don Hagler dhaglerjr@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] keeping wm edits Date: Mon, 07 Nov 2005 16:08:02 -0500
what version of recon-all do you have?
Don Hagler wrote:
When I run recon-all with the -autorecon2-wm flag, my white matter edits get overwritten, presumably by aseg, even if I use the -keepwmedits flag. Is that the correct behavior or is this a bug?
If instead of -autorecon2-wm I use -stage2, then the wm is untouched (as desired). For some reason though, it was then unable to find the pons and I had to use the -pons-xyz option to get it to work. Any idea why using -stage2 would produce this problem with finding the pons?
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422