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These outputs were generated using the regular pipeline 7.1.1
I tried the infant pipeline as well but results were less desirable.
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________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Zollei, Lilla,Ph.D. LZOLLEI@mgh.harvard.edu Sent: Wednesday, October 21, 2020, 10:00 AM To: Freesurfer support list Subject: Re: [Freesurfer] Freesurfer edits
* External Email - Caution * Hi Jim, Did you use the infant or the regular pipeline here? Lilla ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Alexopoulos, Dimitrios dimitriosalexopoulos@wustl.edu Sent: Tuesday, October 20, 2020 11:24 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Freesurfer edits
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Hi freesurfer editing experts.
Below are snapshots of the brainmask, aseg and wm.mgz for a 2 year old run through FS 7.1.1
I’m hoping for feedback on the best way to make the relevant edits to the three blue-circled regions.
1. In the superior regions I think control points will help to pick up some WM to help fuill
2. In the left hemisphere medial prefrontal (gyrus rectus) regions, the WM is overestimated. I presume removing WM voxels from the wm.mgz is the best approach?
3. The left temporal pole region is missing GM/cortex and there really isn’t any WM that would help with controls points or adding WM voxels. How can I add GM to this area?
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