You can't really do a left-right flip in tkregister2. ok, you can with "Sag Mirror", but I would *highly* recommend that you find out whether you really need one or not and, if so, why. LR orientation can be tricky to determine, even within the same subject. Are you using nifti?
Stacy Chu wrote:
Hi all,
I used
reg-feat2anat --feat istlevel_FWIO_fmri_NYU_KB_Nov30_06_epi1swap_z2_3.feat --subject FREESURFERRECON_FWIO_fmri_NYU_KB_Nov30_06_20061130.095534.281000_1
and then
reg-feat2anat --feat istlevel_FWIO_fmri_NYU_KB_Nov30_06_epi1swap_z2_3.feat --subject FREESURFERRECON_FWIO_fmri_NYU_KB_Nov30_06_20061130.095534.281000_1 --manual
to register and edit the registration of a functional to its anatomical volume. The initial registration came out pretty bad and I think I need to do a left-right flip. I see that I can rotate/translate/resize using tkregister2, but I can't figure out how to make a flip. Does anyone know the best way to do that? If the registration looks so bad do I need to change something in the command for my initial registration process? Thanks!
Best,
Stacy
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