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Hi Freesurfer Community,
The NextBrain page showcases the results of the pipeline on the Edlow brain binned at 200um, but we weren't able to reproduce this on our data with a voxel size < 300 um (thus we binned the data). With my colleague Andrew, we've pinpointed the issue to the cartoon fitting step.
On what system was the NextBrain run at this resolution? I assume it was run on CPU only? Did you have to tweak the cartoon or other key steps to make it run?
Best regards,
Dr Matthieu Chourrout [orcid logo 16px] https://secure-web.cisco.com/1tiMIHDVZbi1_soxzRzk-v66TQ9fs4j0sOPE5nQKOghqmPCbTrhwSaTPfpnxSdARQKbAEQje-REikDuSM16D6HxBsA1I5iTrncEToD4dYzCbGaQ1h6sLrEAe2JH5qGXVFRPTt0Rsrd0GzjSq6OeKZFbx1Mnk6uDnWSQceO2u4Y3nzsoHJGXDVR_swYlewjBAXZ4LRIyQc_MaYR-15E4BOUxHNvWNsKdpWwEz8n4jrstyvGF9vsHwoey9gJql5IQ01-m7GqtoeE4wuXQW--2-akFIN9h3wUzXjOWMfFADRIcAINOllz5_uhx7DsoUGFlk_MFu0D1ooJA8gDP7YHT95V93iNVoq3S0dWOyfyaagjyI/https%3A%2F%2Forcid.org%2F0000-0002-2282-6976
Research Fellow on Correlative X-ray Imaging for the Large-scale Imaging of Neural Circuits
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Materials, Structure and Manufacturing at Harwell (MSMaH)https://secure-web.cisco.com/1H0MGshh9I-h03eOLwUTo_X7Tm443MK0cYSkOlls2X_MeopzveOAqsWX5xBr37o3lWkFMuxn2eiGAGQGx9JISHo0ZprbvdwT0_29qLh6zDR_1pGEmZoilHB3stgNM6bMKW5LxZEZ9DxvjrnuE6kz-KPd-_PZp1wRTKmnbYmwNGKyU8q6jLnldVOTcyNi_XiEVmT3TlrUPXPQ5BZ0SW1Yvs1-p9noLPeXCquCSUp1OlGD7btArSHpw5CPIER5vL0G7z87dUjSMOiC-poyWRJFCDWtViSeheMf_Z_suIADs2jDkvfdsXAzGv3oJtXU1D2Mh3uK8CKx9ddaS7ZgH7JMYElmTpGVqHP_2gRYhDvLi6q4/https%3A%2F%2Fwww.ucl.ac.uk%2Fmaterials-harwell%2Fmaterials-structure-and-manufacturing-harwell-activity%23%3A%7E%3Atext%3DLed%2520by%2520Professor%2520Peter%2520Lee,group%20with%20over%2030%20members.
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