Hi all,
I am having errors with the tkregister-sess command. I tried re-doing stages 1 & 2 of recon-all, but still get the same errors (see log window below)running the NMR standard environment on Kermit. It can't seem to open the structural even though the image files seem to be present in the structural directory (DCS_recon). Thanks!!!!!
Functional data located in /space/phrenic/6/users/wright/studies/DCS Structural data located in /space/phrenic/6/users/wright/studies/DCS_recon
[kermit:DCS] (nmr-std-env) tkregister-sess -sf sessid_all -df sessdir -------------------------------------------------------------- tkregister-sess logfile is /autofs/space/phrenic_006/users/wright/studies/DCS/log/tkregister-sess.log --------------------------------------------------------------
Session: /autofs/space/phrenic_006/users/wright/studies/DCS/dcs1.1 ---------------- Mon Oct 24 14:34:51 EDT 2005 INFO: anatdir set to /space/phrenic/6/users/wright/studies/DCS_recon//dcs1/mri/T1
---------------------------------------------------- INFO: surface white does not exist for dcs1, so it will not be loaded into the display. This may be because the subject's anatomical data has not been processed with FreeSurfer in order to reconstruct the surface. You can change the surface from white with the -surf option (followed by the name of the surface. Continuing... ----------------------------------------------------
________________________________________________ /autofs/space/phrenic_006/users/wright/studies/DCS/dcs1.1/bold/010 tkregister2 --targ /autofs/space/phrenic_006/users/wright/studies/DCS_recon/dcs1/mri/T1 --mov ./f bshort --reg ../register.dat --plane cor --title dcs1--dcs1.1--010 --volview targ ________________________________________________ target volume /autofs/space/phrenic_006/users/wright/studies/DCS_recon/dcs1/mri/T1 movable volume ./f reg file ../register.dat LoadVol 1 $Id: tkregister2.c,v 1.30 2004/12/14 19:58:00 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.001 -0.002 -0.001 -1.863; -0.002 -1.001 -0.000 -91.365; 0.001 -0.000 1.001 -10.891; 0.000 0.000 0.000 1.000; float2int = 2 --------------------------------------- INFO: loading target /autofs/space/phrenic_006/users/wright/studies/DCS_recon/dcs1/mri/T1 INFO: changing target type to float Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable ./f INFO: bvolumeRead: min = 0, max = 1295 INFO: changing move type to float Tmov: -------------------- -3.125 0.000 0.000 100.000; 0.000 0.000 3.300 -49.500; 0.000 -3.125 0.000 100.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 2 INFO: making tkreg matrix compatible with round ---- New registration matrix -------- 1.001 -0.001 -0.001 -0.304; -0.002 -1.001 -0.000 -93.078; 0.001 -0.000 1.001 -12.428; 0.000 0.000 -0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.001 -0.001 -0.001 -0.304; -0.002 -1.001 -0.000 -93.078; 0.001 -0.000 1.001 -12.428; 0.000 0.000 -0.000 1.000; subject = dcs1 Zoom Factor = 2 FOV = 256 Opening window dcs1