[Freesurfer] Manual correction for brainstem module

Jacky Lee

8 May 2016 8 May '16

9:01 p.m.

Hi freesurfer experts,

I have successfully run the brainstem module for some subjects. On visual checking, I can see there are voxels with T1 hypointense lesions mislabelled as non-brainstem tissue. I manually corrected them on the brainstemSsLabels.v10.mgz on Freeview. Then how do I obtain this new corrected volume of the brainstem substructures?

Thanks.

Regards,

Jacky

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