Re: [Freesurfer] (no subject)

The problem is that the fwhm is not-a-number (glmdir/fwhm.dat). Usually this means that there is something messed up with the mask (glmdir/mask.mgh). View the mask to see what is up tksurfer fsaverage lh inflated -ov glmdir/mask.mgh -fminmax .5 1 doug

On 11/01/2012 02:39 PM, Ryan wrote:

Doug, Here are the files.

On Thu, Nov 1, 2012 at 2:00 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

Can you send the command line and attach the files?
thanks
doug


On 11/01/2012 01:11 PM, Ryan wrote:

    Doug,
       I tried running mri_glmfit-sim without the --bg flag and it
    finished in 10 minutes without any errors. This has never
    happened before, so I highly suspect these results. Do you
    know what could be wrong? In case you need it, the summary
    file output and terminal output are attached.

       -Ryan


-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358 <tel:617-724-2358>
Fax: 617-726-7422 <tel:617-726-7422>

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>



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