Bruce,
I've uploaded one of our subjects to the FileDrop
http://gate.nmr.mgh.harvard.edu/filedrop2/?p=31qhh4docnq
The areas we're concerned with are temporal regions. [151,150,131] is one instance of these unknown entorhinal regions.
Aidan
On Wed, Sep 13, 2017 at 2:43 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Jake
if you upload a subject and send us the voxel coords you are looking at one of us will take a look
cheers Bruce On Wed, 13 Sep 2017, Jake Rieke wrote:
We are using Freesurfer v6.0
Biomedical Engineer, Brain Rehabilitation Research CenterMalcolm Randall VA Medical Center, 1601 SW
Archer Road, Gainesville, FL 32608 Phone: 1-352-376-1611 ext. 5249, E-mail: jakerieke@gmail.com
On Thu, Sep 7, 2017 at 6:17 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu> wrote: what version of FS are you using?
On 09/07/2017 03:19 PM, Aidan Murphy wrote: > > We're running QA on Freesurfer's aseg and aparc+aseg volumes. Onthe > aparc volume we're noticing fairly large unknown regions in what > should be entorhinal cortex, specifically where it comes up against > the hippocampus and amygdala. The aseg volumes label these unknown > regions as cortex. I've searched the archives and haven't been able to > find anything similar from recent years. > > I've attached some axial screenshots of the raw T1, the aseg and the > aparc+aseg. > >
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.