Hi Freesurfer experts,
After installing v5.3.0 (CentOS 6 64bit), the command "recon-all -s test -i sample-001.mgz -i sample-002.mgz -autorecon1" finished without error.
Then, when I ran "recon-all -s test -subcortseg", I got the following error:
========== $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --ctab /usr/local/freesurfer/5.3.0/dist/ASegStatsLUT.txt --subject test sysname Linux hostname dhcp006 machine x86_64 user yamamoto UseRobust 0 atlas_icv (eTIV) = 1629767 mm^3 (det: 1.195328 ) MRISread(/home/yamamoto/freesurfer/5.3.0/dist/subjects/test/surf/lh.white): could not open file ==========
I encountered this error in v5.2.0, and am still having the same error in v5.3.0. Is this a known issue?
I attached the recon-all.log file. Any help is greatly appreciated.
Best, Akio